I'd say there's either something wrong with your charger or a battery, do you have any way to check the voltage of the battery? You can charge it best you can then test the voltage, if it reads something close to 4.2 volts per cell or 8.4v for the whole pack voltage, then you're good and it's the charger. Also check the balance of the cells, they should be within <0.03 volts from each other, so if it reads, say, 3.73 for the first cell, and 3.74 for the second you're good, but if the second cell reads, say 3.69 then they are significantly out of balance, and you need to balance them via the charger. You may need/want a new or better charger, I'm not going to push you toward a specific charger though. Right now I have a very basic balance charger, the SkyRC E3 (charges 2-3s LiPos). Probably am going to upgrade to a better/fast charger sometime, preferably one with a screen/readout of the battery ratings.
Anyway, welcome to the forum!
Also, make sure your charger is in the "LiPo" mode, not sure if that charger is always in LiPo mode or not, but if it's in NiMh mode then that could be causing issues. If you don't have a way to check the voltage of the pack, I recommend getting a LiPo alarm/buzzer and/or a multimeter, I have a LiPo buzzer/alarm, it tells me the voltage of each cell and of the whole pack, plus it'll beep loudly when the voltage of the pack goes under the cut-off voltage that the user set (you can set it anywhere from 2.7v to 3.8v, I prefer 3.4v cutoff). They are a GREAT tool, super small, you'll probably be able to fit it in your rig when running (leave it connected and it'll monito the voltage, that's how it's desgined), and they are CHEAP too, at ~<$5!!