The exhaust effects everything really- because of the way a two stroke engine works, both the exhaust and inlet ports are open at the same time, meaning that as fresh air fuel mix goes in, some leaks out. This is where the exhaust comes in. The exhaust gases flow down the exhaust through a series of chambers tuned dependent on the application of the pipe, they then reach the end and deflect off of a cone, this sends back a pulse of exhaust gases forcing the leaked fresh fuel mix back into the cylinder. You putting a kink in the header is probably destroying or disturbing the pulse, along with other things- causing the engine to burn more fuel and run richer, so something else is probably causing your engine not to run. Your exhaust design may also be disturbing the pressures needed to force fuel into the engine, thus causing the fuel not enter the engine. If I could see a video that would be great