I had the same thing happen to me "twice". I called Traxxas tech line and they told me that I was running rich and that oil from the fuel was building up in the baffle then melting it. I put another stock pipe on leaned it out and it happened again . This time traxxas told me i was running to lean and it was getting to hot.
After going through two of the junk plastic pipes that came stock on my 3.3 maxx I switched to the aluminum tuned pipe traxxas part #4942 problem is gone and truck is running "alot" better. I did notice that my temp went up a lil with the 4942 pipe. Also, Traxxas is comming out with a new Resonator tuned pipe for the 3.3 with in the next 30 days so keep an eye out for it. I will probably switch to it once its on the market since it is made for the 3.3.
Hope that helps ya