I ran into that back in the day, but that was with the old style transmission. And that was after a year or so of abuse, but only with an OS21RG, which I'm guessing isn't putting out near the power of your 28. I snapped the two speed shaft in twain.
If the new style trans is anything like the revo transmission, I haven't busted anything in my BB revo other than gears. I went RRP for the main input and 2-speed gears, except for the two main output gears. My BB revo started as a slayer, which was geared different using different output gears. I never shredded those, but I fried the input and two speed a couple times, then went with RRP. I'm still running the plastic trans case and plastic center/outer axles on that revo too. When I did run it, I ran it a lot and would need to replace the centers at least once a season and the rears almost as frequently, but I liked having cheap axles to absorb my stupidity vs the transmission/diffs absorbing it.
I have an LRP28 in my BB revo and I honestly can't recall every snapping a shaft in it.
With my other revo, I put an OS21TM in it. It's not nearly as torquey as the LRP28, but it's enough to make the truck a lot more fun than the 3.3 ever did. That one was a revo 3.3 when I got it used. I made it to about tank 8 of break in before shearing pins in the trans. I fixed it, then shelled the gears the next weekend. I wasn't about to go through that constantly... Then I went with RRP fully in that transmission, then had a pin fall out, but once I replaced it, it's held up ok.
Anyway, long winded way to say, either your getting really bad luck, or something in your alloy case is aligned badly, or your getting crappy shafts, or your slipper is way too tight.