The theory behind BDC is that it promotes longer engine life due to the fact that as the engine cools, the piston isn't keeping the sleeve from shrinking and crushing the piston with it.
I've been doing it on the past 4 engines I have owned. Every time I shut the engine down (not just during break in) I set the piston to BDC. 1 of the engines was still running strong at 6 gallons (os 15 cv-r(x)), another os 15 cv-r lasted 5 gallons before I tried to port it... it still has good compression, but I messed it up. Another was the OS 21 RG-X(P), it blew the crank at 2 gallons, so I don't know how long it would have lasted. I replaced the crank, but also replaced it with a new engine. It's now a backup.